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Sample GSM927148 Query DataSets for GSM927148
Status Public on Nov 01, 2013
Title Tumor 61
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 37
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIIA
tumor grade: 1
node status: N1
survival (months): 55
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.048032105
cg00000108 3.309627386
cg00000109 2.240803239
cg00000165 -0.126697737
cg00000236 2.856505548
cg00000289 0.629113261
cg00000292 0.77803452
cg00000321 -1.016030876
cg00000363 -1.297592193
cg00000622 -4.629278263
cg00000658 2.065904018
cg00000714 -2.352768052
cg00000721 3.393502432
cg00000734 -2.70038113
cg00000769 -3.079037106
cg00000807 2.248958255
cg00000884 2.48157473
cg00000905 -2.786160037
cg00000924 0.783247561
cg00000948 0.781899022

Total number of rows: 485577

Table truncated, full table size 11075 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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