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Sample GSM927146 Query DataSets for GSM927146
Status Public on Nov 01, 2013
Title Tumor 73
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 53
tissue type: Tumor
estrogen receptor status: Negative
Stage: IIIB
survival (months): 3
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.438989583
cg00000108 3.501808413
cg00000109 2.219089068
cg00000165 -1.23201557
cg00000236 2.518316299
cg00000289 1.260080819
cg00000292 0.661658911
cg00000321 -1.196673932
cg00000363 -1.632541554
cg00000622 -4.749431765
cg00000658 2.391507844
cg00000714 -2.298259609
cg00000721 3.255837283
cg00000734 -2.855539912
cg00000769 -3.054360796
cg00000807 2.166994568
cg00000884 2.593343389
cg00000905 -2.83002969
cg00000924 0.801545012
cg00000948 3.395312759

Total number of rows: 485577

Table truncated, full table size 11078 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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