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Sample GSM927145 Query DataSets for GSM927145
Status Public on Nov 01, 2013
Title Tumor 23
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 45
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: I
tumor grade: 3
node status: N0
survival (months): 58
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.189389404
cg00000108 3.728366143
cg00000109 2.067526322
cg00000165 -0.823043818
cg00000236 2.380973237
cg00000289 1.25552383
cg00000292 0.91296695
cg00000321 -0.943880581
cg00000363 -0.85772843
cg00000622 -4.517522243
cg00000658 2.065588335
cg00000714 -1.564206344
cg00000721 3.207047764
cg00000734 -2.787944713
cg00000769 -2.970188194
cg00000807 2.059278498
cg00000884 2.541369527
cg00000905 -2.650608126
cg00000924 0.737096379
cg00000948 3.203706926

Total number of rows: 485577

Table truncated, full table size 11073 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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