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Sample GSM927144 Query DataSets for GSM927144
Status Public on Nov 01, 2013
Title Tumor 58
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 52
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIA
tumor grade: 1
node status: N0
survival (months): 63
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -2.064237998
cg00000108 3.877857882
cg00000109 2.637451804
cg00000165 0.028237039
cg00000236 2.872905303
cg00000289 0.632163441
cg00000292 0.91870023
cg00000321 -1.279939048
cg00000363 -0.775889299
cg00000622 -4.700649748
cg00000658 2.252966085
cg00000714 -2.490010225
cg00000721 3.256486358
cg00000734 -2.863790191
cg00000769 -3.087411604
cg00000807 2.493922763
cg00000884 2.67406505
cg00000905 -2.513206055
cg00000924 0.636598367
cg00000948 3.002579513

Total number of rows: 485577

Table truncated, full table size 11070 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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