GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM927143 Query DataSets for GSM927143
Status Public on Nov 01, 2013
Title Tumor 72
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 52
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: I
node status: N0
survival (months): 41
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.028712008
cg00000108 3.447112261
cg00000109 2.066140142
cg00000165 -1.138493131
cg00000236 2.402044395
cg00000289 1.335856939
cg00000292 1.345269304
cg00000321 -0.694079646
cg00000363 -1.173475034
cg00000622 -4.822202607
cg00000658 2.215186972
cg00000714 -2.304130097
cg00000721 3.40136015
cg00000734 -2.800152874
cg00000769 -3.464788113
cg00000807 2.443977916
cg00000884 2.313097465
cg00000905 -2.787084969
cg00000924 0.749165079
cg00000948 3.350894907

Total number of rows: 485577

Table truncated, full table size 11069 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap