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Sample GSM927142 Query DataSets for GSM927142
Status Public on Nov 01, 2013
Title Normal 57
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: European-American
age: 93
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.49196376
cg00000108 3.595085439
cg00000109 1.761638098
cg00000165 -1.180883752
cg00000236 2.380883453
cg00000289 1.264780926
cg00000292 0.644550795
cg00000321 -1.396689475
cg00000363 -1.750379365
cg00000622 -4.627987672
cg00000658 2.311219993
cg00000714 -2.569880334
cg00000721 3.420653132
cg00000734 -2.900560807
cg00000769 -3.233362753
cg00000807 2.331232061
cg00000884 2.359245441
cg00000905 -2.721469037
cg00000924 0.661210246
cg00000948 3.581180447

Total number of rows: 485577

Table truncated, full table size 11079 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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