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Sample GSM927141 Query DataSets for GSM927141
Status Public on Nov 01, 2013
Title Normal 22
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 43
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.400165043
cg00000108 3.254165609
cg00000109 2.197279129
cg00000165 -0.447239511
cg00000236 2.748067353
cg00000289 0.82394132
cg00000292 0.587011585
cg00000321 -1.286881284
cg00000363 -0.987976838
cg00000622 -4.781683336
cg00000658 2.062760686
cg00000714 -2.059855483
cg00000721 3.094969655
cg00000734 -2.668836925
cg00000769 -3.445476878
cg00000807 1.433767021
cg00000884 2.259625451
cg00000905 -2.344315069
cg00000924 0.489663135
cg00000948 1.62112622

Total number of rows: 485577

Table truncated, full table size 11082 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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