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Sample GSM927140 Query DataSets for GSM927140
Status Public on Nov 01, 2013
Title Tumor 21
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 73
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIA
tumor grade: 3
node status: N0
survival (months): 16
survival event: Dead
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.29437158
cg00000108 3.715229019
cg00000109 2.578659316
cg00000165 -0.500892329
cg00000236 2.66121192
cg00000289 0.670957027
cg00000292 2.201878328
cg00000321 0.708920987
cg00000363 -0.950345775
cg00000622 -4.733154038
cg00000658 2.146678462
cg00000714 -1.999632008
cg00000721 3.027591807
cg00000734 -2.998473348
cg00000769 -3.697074956
cg00000807 1.536082674
cg00000884 1.930345771
cg00000905 -2.612008848
cg00000924 0.58787125
cg00000948 0.65226614

Total number of rows: 485577

Table truncated, full table size 11080 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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