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Sample GSM927139 Query DataSets for GSM927139
Status Public on Nov 01, 2013
Title Normal 21
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 73
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.803483699
cg00000108 3.305073895
cg00000109 1.590648033
cg00000165 -1.529697625
cg00000236 2.20549261
cg00000289 1.34033233
cg00000292 0.885960882
cg00000321 -1.120535826
cg00000363 -1.788641651
cg00000622 -4.386697163
cg00000658 2.297387413
cg00000714 -2.19583571
cg00000721 3.316451092
cg00000734 -2.035581931
cg00000769 -3.150344189
cg00000807 2.534027138
cg00000884 2.10720548
cg00000905 -2.620190936
cg00000924 0.187750663
cg00000948 3.398816461

Total number of rows: 485577

Table truncated, full table size 11081 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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