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Sample GSM927137 Query DataSets for GSM927137
Status Public on Nov 01, 2013
Title Normal 20
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 45
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.396217529
cg00000108 3.503305201
cg00000109 1.900971082
cg00000165 -1.312920439
cg00000236 2.621612774
cg00000289 1.364732001
cg00000292 1.217385949
cg00000321 -1.281645221
cg00000363 -2.103547481
cg00000622 -4.526350816
cg00000658 2.222586083
cg00000714 -2.029524447
cg00000721 3.448172715
cg00000734 -2.590662907
cg00000769 -2.948055029
cg00000807 2.688644992
cg00000884 2.34932377
cg00000905 -2.844120847
cg00000924 0.62257107
cg00000948 3.33131648

Total number of rows: 485577

Table truncated, full table size 11075 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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