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Sample GSM927135 Query DataSets for GSM927135
Status Public on Nov 01, 2013
Title Tumor 11
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 37
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIB
tumor grade: 3
node status: N1
survival (months): 24
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.78912285
cg00000108 3.428011325
cg00000109 2.402171638
cg00000165 0.337618611
cg00000236 2.519147611
cg00000289 0.807168879
cg00000292 0.988365359
cg00000321 -0.254583922
cg00000363 -1.348362103
cg00000622 -4.715684392
cg00000658 1.922869196
cg00000714 -1.821890795
cg00000721 3.439563493
cg00000734 -2.490878402
cg00000769 -3.432938899
cg00000807 2.023426236
cg00000884 2.408539607
cg00000905 -2.792650062
cg00000924 0.278516288
cg00000948 3.173146189

Total number of rows: 485577

Table truncated, full table size 11073 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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