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Sample GSM927134 Query DataSets for GSM927134
Status Public on Nov 01, 2013
Title Normal 11
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 37
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.569706137
cg00000108 3.458924558
cg00000109 1.955511946
cg00000165 -1.386252658
cg00000236 2.532732308
cg00000289 1.198921507
cg00000292 0.830295087
cg00000321 -1.295646998
cg00000363 -1.734908081
cg00000622 -4.802839778
cg00000658 2.405214851
cg00000714 -2.202809459
cg00000721 3.410741427
cg00000734 -2.752427506
cg00000769 -3.442562738
cg00000807 2.218130053
cg00000884 2.35639473
cg00000905 -2.666391204
cg00000924 0.662494348
cg00000948 3.141600576

Total number of rows: 485577

Table truncated, full table size 11077 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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