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Sample GSM927132 Query DataSets for GSM927132
Status Public on Nov 01, 2013
Title Tumor 55
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 89
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIIA
tumor grade: 2
node status: N2
survival (months): 13
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.793449344
cg00000108 3.636665743
cg00000109 2.409531362
cg00000165 -1.126801246
cg00000236 2.819605292
cg00000289 1.086203487
cg00000292 1.149471144
cg00000321 -0.199480881
cg00000363 -0.419912613
cg00000622 -4.555053479
cg00000658 2.175576274
cg00000714 -1.92684433
cg00000721 3.217276573
cg00000734 -2.52170999
cg00000769 -3.08225382
cg00000807 2.312826002
cg00000884 2.187196169
cg00000905 -2.68126368
cg00000924 0.510665291
cg00000948 3.316049679

Total number of rows: 485577

Table truncated, full table size 11068 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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