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Sample GSM927131 Query DataSets for GSM927131
Status Public on Nov 01, 2013
Title Tumor 17
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 34
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIIA
tumor grade: 2
node status: N1
survival (months): 83
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.887513552
cg00000108 3.534251507
cg00000109 1.97021698
cg00000165 -1.336295925
cg00000236 2.578517306
cg00000289 1.50415166
cg00000292 1.379053956
cg00000321 -0.870257198
cg00000363 -1.395870553
cg00000622 -4.716221505
cg00000658 2.302572985
cg00000714 -1.789815183
cg00000721 3.34166406
cg00000734 -2.973295132
cg00000769 -3.101689842
cg00000807 2.207395152
cg00000884 2.373630348
cg00000905 -2.657459949
cg00000924 0.766347449
cg00000948 3.383173259

Total number of rows: 485577

Table truncated, full table size 11071 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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