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Sample GSM927130 Query DataSets for GSM927130
Status Public on Nov 01, 2013
Title Tumor 69
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 75
tissue type: Tumor
estrogen receptor status: Negative
Stage: I
tumor grade: 3
node status: N0
survival (months): 82
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.128426623
cg00000108 3.664106279
cg00000109 2.194025694
cg00000165 -0.936911738
cg00000236 2.306036149
cg00000289 1.127129126
cg00000292 1.047120285
cg00000321 -0.659877425
cg00000363 -0.402577968
cg00000622 -4.503167082
cg00000658 1.854216758
cg00000714 -1.88252258
cg00000721 3.120451991
cg00000734 -2.64165328
cg00000769 -2.983662002
cg00000807 1.211537797
cg00000884 2.133229034
cg00000905 -2.674326319
cg00000924 0.586165544
cg00000948 2.316209166

Total number of rows: 485577

Table truncated, full table size 11079 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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