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Sample GSM927129 Query DataSets for GSM927129
Status Public on Nov 01, 2013
Title Tumor 51
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 45
tissue type: Tumor
estrogen receptor status: Negative
Stage: II
node status: N0
survival (months): 86
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.906969465
cg00000108 3.243193633
cg00000109 2.249025317
cg00000165 -1.423102159
cg00000236 1.963699681
cg00000289 1.243670906
cg00000292 1.440653162
cg00000321 -1.487673614
cg00000363 -1.369644341
cg00000622 -4.559044587
cg00000658 2.132633883
cg00000714 -2.068040934
cg00000721 3.385085115
cg00000734 -2.143442364
cg00000769 -2.806671403
cg00000807 2.090932537
cg00000884 2.380274942
cg00000905 -2.626754805
cg00000924 0.424110699
cg00000948 3.055801147

Total number of rows: 485577

Table truncated, full table size 11074 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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