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Sample GSM927128 Query DataSets for GSM927128
Status Public on Nov 01, 2013
Title Tumor 18
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 55
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIIa
tumor grade: 3
node status: N2
survival (months): 17
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -2.195414058
cg00000108 3.404423714
cg00000109 2.313004004
cg00000165 0.710956547
cg00000236 2.458120567
cg00000289 0.940340218
cg00000292 0.003047035
cg00000321 -0.301517487
cg00000363 -1.778926647
cg00000622 -4.679310078
cg00000658 2.271215362
cg00000714 -2.613850547
cg00000721 3.157876394
cg00000734 -2.053363978
cg00000769 -3.319559559
cg00000807 2.514485646
cg00000884 2.27902204
cg00000905 -2.416388176
cg00000924 0.024672956
cg00000948 3.592506405

Total number of rows: 485577

Table truncated, full table size 11122 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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