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Sample GSM927127 Query DataSets for GSM927127
Status Public on Nov 01, 2013
Title Normal 18
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 55
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.275797416
cg00000108 3.234706722
cg00000109 1.855457916
cg00000165 -0.951026428
cg00000236 2.473240704
cg00000289 1.432932449
cg00000292 0.906039885
cg00000321 -1.048705147
cg00000363 -1.569063366
cg00000622 -4.741017201
cg00000658 2.338276728
cg00000714 -2.043705141
cg00000721 3.273293141
cg00000734 -2.850189336
cg00000769 -3.601783656
cg00000807 2.388431543
cg00000884 2.49727761
cg00000905 -2.798944938
cg00000924 0.775082584
cg00000948 3.159655256

Total number of rows: 485577

Table truncated, full table size 11074 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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