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Sample GSM927126 Query DataSets for GSM927126
Status Public on Nov 01, 2013
Title Tumor 19
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 46
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIB
tumor grade: 3
node status: N1
survival (months): 29
survival event: Dead
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.352156954
cg00000108 3.486182955
cg00000109 2.273735816
cg00000165 -1.632603054
cg00000236 2.304565784
cg00000289 1.032949143
cg00000292 1.590709354
cg00000321 -0.11764938
cg00000363 0.096100268
cg00000622 -4.705744613
cg00000658 2.283308544
cg00000714 -1.803007691
cg00000721 2.869296193
cg00000734 -2.019577274
cg00000769 -2.929564259
cg00000807 2.387538771
cg00000884 2.144945909
cg00000905 -2.796629617
cg00000924 0.282171854
cg00000948 2.821031742

Total number of rows: 485577

Table truncated, full table size 11085 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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