GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM927125 Query DataSets for GSM927125
Status Public on Nov 01, 2013
Title Normal 15
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 44
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.37215955
cg00000108 3.394353815
cg00000109 1.925792132
cg00000165 -1.073835873
cg00000236 2.423767052
cg00000289 1.602455218
cg00000292 0.879990634
cg00000321 -1.164143233
cg00000363 -1.554022096
cg00000622 -4.522823083
cg00000658 2.441953983
cg00000714 -2.130030961
cg00000721 3.279410181
cg00000734 -2.436681135
cg00000769 -3.391123803
cg00000807 1.927791554
cg00000884 2.431594007
cg00000905 -2.826829922
cg00000924 0.497717868
cg00000948 3.174087587

Total number of rows: 485577

Table truncated, full table size 11076 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap