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Sample GSM927123 Query DataSets for GSM927123
Status Public on Nov 01, 2013
Title Tumor 52
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 40
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIIA
tumor grade: 2
node status: N2
survival (months): 11
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -2.624775698
cg00000108 3.471948958
cg00000109 2.717720028
cg00000165 -1.650139505
cg00000236 2.846003451
cg00000289 0.200398053
cg00000292 -0.62829139
cg00000321 -1.419295004
cg00000363 -0.971056183
cg00000622 -4.458216396
cg00000658 2.322455008
cg00000714 -2.56560549
cg00000721 3.143935932
cg00000734 -2.095850092
cg00000769 -3.515971264
cg00000807 1.957006054
cg00000884 2.073497571
cg00000905 -2.792855911
cg00000924 0.100419327
cg00000948 0.203646148

Total number of rows: 485577

Table truncated, full table size 11144 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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