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Sample GSM927122 Query DataSets for GSM927122
Status Public on Nov 01, 2013
Title Tumor 14
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 50
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIA
tumor grade: 3
node status: N0
survival (months): 91
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 1.026970965
cg00000108 3.476173463
cg00000109 2.461179441
cg00000165 -0.836251992
cg00000236 2.692518102
cg00000289 1.651622498
cg00000292 2.322130517
cg00000321 -0.617653639
cg00000363 -0.227320142
cg00000622 -4.303209784
cg00000658 2.092348352
cg00000714 -0.943851242
cg00000721 3.062563077
cg00000734 -2.323657745
cg00000769 -3.500127999
cg00000807 1.883887678
cg00000884 2.424459456
cg00000905 -2.68489825
cg00000924 0.342967169
cg00000948 3.080406017

Total number of rows: 485577

Table truncated, full table size 11067 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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