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Sample GSM927121 Query DataSets for GSM927121
Status Public on Nov 01, 2013
Title Tumor 50
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 57
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIIA
tumor grade: 2
node status: N1
survival (months): 90
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.967647505
cg00000108 3.370959958
cg00000109 2.756175775
cg00000165 -0.384069856
cg00000236 2.523318143
cg00000289 1.066361576
cg00000292 0.806235885
cg00000321 -0.210824642
cg00000363 0.111842224
cg00000622 -4.618070595
cg00000658 2.00379282
cg00000714 -1.86430824
cg00000721 3.176709368
cg00000734 -2.641829609
cg00000769 -3.634086762
cg00000807 1.961790991
cg00000884 2.176275656
cg00000905 -2.689143332
cg00000924 0.860033626
cg00000948 3.307239657

Total number of rows: 485577

Table truncated, full table size 11063 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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