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Sample GSM927120 Query DataSets for GSM927120
Status Public on Nov 01, 2013
Title Tumor 48
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 84
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIIB
tumor grade: 2
node status: N2
survival (months): 0
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -2.015622584
cg00000108 3.967755472
cg00000109 2.76988611
cg00000165 1.057676358
cg00000236 2.78419222
cg00000289 0.938626554
cg00000292 -0.707769761
cg00000321 1.030364716
cg00000363 -1.17489626
cg00000622 -4.612829203
cg00000658 2.152415806
cg00000714 -2.15198252
cg00000721 3.128789126
cg00000734 -2.32814376
cg00000769 -3.327871786
cg00000807 2.25904832
cg00000884 2.164361159
cg00000905 -2.649765095
cg00000924 -0.940733227
cg00000948 0.901087974

Total number of rows: 485577

Table truncated, full table size 11092 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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