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Sample GSM927118 Query DataSets for GSM927118
Status Public on Nov 01, 2013
Title Tumor 47
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 81
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIA
tumor grade: 3
node status: N0
survival (months): 70
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.274250664
cg00000108 3.600717367
cg00000109 2.392031493
cg00000165 0.557509622
cg00000236 2.691756734
cg00000289 1.04188179
cg00000292 1.508139333
cg00000321 0.029705437
cg00000363 0.496204972
cg00000622 -4.511779925
cg00000658 2.314505859
cg00000714 -1.610605172
cg00000721 3.290917843
cg00000734 -2.822186087
cg00000769 -3.830849924
cg00000807 1.739054088
cg00000884 2.258936335
cg00000905 -2.677338321
cg00000924 0.42262024
cg00000948 2.861477845

Total number of rows: 485577

Table truncated, full table size 11066 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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