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Sample GSM927117 Query DataSets for GSM927117
Status Public on Nov 01, 2013
Title Tumor 09
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 59
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIB
tumor grade: 3
node status: N1
survival (months): 15
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.483825177
cg00000108 3.735523375
cg00000109 2.389507106
cg00000165 0.264468455
cg00000236 2.74562697
cg00000289 1.181932927
cg00000292 1.571360834
cg00000321 -0.349479609
cg00000363 -0.286262217
cg00000622 -4.574716827
cg00000658 2.302746673
cg00000714 -2.115144943
cg00000721 3.331799865
cg00000734 -2.772431102
cg00000769 -3.032056741
cg00000807 1.901672646
cg00000884 2.460026972
cg00000905 -2.783878405
cg00000924 0.611905512
cg00000948 3.375442496

Total number of rows: 485577

Table truncated, full table size 11070 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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