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Sample GSM927116 Query DataSets for GSM927116
Status Public on Nov 01, 2013
Title Tumor 46
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 45
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIA
tumor grade: 3
node status: N0
survival (months): 98
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -2.300575449
cg00000108 3.354342373
cg00000109 2.888969471
cg00000165 -0.746087706
cg00000236 2.958518565
cg00000289 0.887270367
cg00000292 0.543314338
cg00000321 -1.985169213
cg00000363 -1.471834056
cg00000622 -4.607677344
cg00000658 1.996604673
cg00000714 -2.569870823
cg00000721 3.108132155
cg00000734 -2.653554326
cg00000769 -3.310403719
cg00000807 1.374781921
cg00000884 2.118027033
cg00000905 -2.538914851
cg00000924 0.315747152
cg00000948 0.89981288

Total number of rows: 485577

Table truncated, full table size 11125 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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