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Sample GSM927115 Query DataSets for GSM927115
Status Public on Nov 01, 2013
Title Tumor 10
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 46
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIA
node status: N1
survival (months): 99
survival event: Alive
death due to cancer: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.740638295
cg00000108 3.319191974
cg00000109 1.943005153
cg00000165 -1.152167297
cg00000236 2.557634615
cg00000289 0.765162186
cg00000292 0.771909162
cg00000321 -1.315201417
cg00000363 -1.333764459
cg00000622 -4.110405055
cg00000658 2.124767543
cg00000714 -1.998474527
cg00000721 3.045606095
cg00000734 -2.151750894
cg00000769 -3.082077103
cg00000807 1.912773371
cg00000884 2.298041871
cg00000905 -2.61329663
cg00000924 0.180668551
cg00000948 3.030244638

Total number of rows: 485577

Table truncated, full table size 11079 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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