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Sample GSM927114 Query DataSets for GSM927114
Status Public on Nov 01, 2013
Title Tumor 45
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 58
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIIB
tumor grade: 2
node status: N2
survival (months): 109
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.296365912
cg00000108 3.429301858
cg00000109 2.279362528
cg00000165 -1.288244599
cg00000236 2.351337858
cg00000289 1.294604233
cg00000292 1.328813494
cg00000321 -1.014483953
cg00000363 -0.646372455
cg00000622 -4.77383457
cg00000658 2.271824527
cg00000714 -2.065639728
cg00000721 3.255835336
cg00000734 -2.462887464
cg00000769 -3.522015426
cg00000807 2.216730686
cg00000884 2.382531201
cg00000905 -2.923219495
cg00000924 0.590968443
cg00000948 3.195408809

Total number of rows: 485577

Table truncated, full table size 11072 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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