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Sample GSM927113 Query DataSets for GSM927113
Status Public on Nov 01, 2013
Title Tumor 44
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 45
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIIB
tumor grade: 3
node status: N0
survival (months): 48
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 0.086328131
cg00000108 3.572397228
cg00000109 2.437326362
cg00000165 -0.735177475
cg00000236 2.809768095
cg00000289 1.382660727
cg00000292 0.684785951
cg00000321 -0.304096425
cg00000363 -0.796463221
cg00000622 -4.447292203
cg00000658 2.343254084
cg00000714 -1.661582728
cg00000721 3.073440819
cg00000734 -2.397922494
cg00000769 -3.5896134
cg00000807 1.893061763
cg00000884 2.468022078
cg00000905 -2.853118245
cg00000924 0.660536941
cg00000948 3.023212587

Total number of rows: 485577

Table truncated, full table size 11066 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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