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Sample GSM927112 Query DataSets for GSM927112
Status Public on Nov 01, 2013
Title Tumor 08
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 48
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIA
tumor grade: 3
node status: N0
survival (months): 111
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.231595919
cg00000108 3.456680907
cg00000109 2.463423127
cg00000165 -1.453796384
cg00000236 2.81756118
cg00000289 0.560712671
cg00000292 0.158728811
cg00000321 1.281291917
cg00000363 -1.706015273
cg00000622 -4.716252685
cg00000658 2.404008277
cg00000714 -2.05595522
cg00000721 3.244505214
cg00000734 -3.082086148
cg00000769 -3.657960204
cg00000807 2.352452463
cg00000884 2.216452413
cg00000905 -2.354747447
cg00000924 0.268805851
cg00000948 3.374493263

Total number of rows: 485577

Table truncated, full table size 11082 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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