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Sample GSM927111 Query DataSets for GSM927111
Status Public on Nov 01, 2013
Title Tumor 43
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 62
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIB
tumor grade: 2
node status: N1
survival (months): 12
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.94707365
cg00000108 3.566347318
cg00000109 2.581623442
cg00000165 0.954190771
cg00000236 2.421277387
cg00000289 0.616044502
cg00000292 2.229627516
cg00000321 0.456514628
cg00000363 -0.833785513
cg00000622 -4.720598923
cg00000658 1.985752621
cg00000714 -1.935877288
cg00000721 2.93802888
cg00000734 -2.680522143
cg00000769 -3.562934283
cg00000807 1.79333323
cg00000884 2.352534713
cg00000905 -2.54377752
cg00000924 1.006376972
cg00000948 3.00089659

Total number of rows: 485577

Table truncated, full table size 11054 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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