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Sample GSM927110 Query DataSets for GSM927110
Status Public on Nov 01, 2013
Title Tumor 42
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 74
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIA
tumor grade: 3
node status: N0
survival (months): 96
survival event: Dead
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.967588769
cg00000108 3.283722936
cg00000109 2.222520381
cg00000165 0.301908501
cg00000236 2.497495688
cg00000289 0.87966636
cg00000292 0.576800037
cg00000321 0.077049857
cg00000363 0.666499423
cg00000622 -4.467511528
cg00000658 2.084429779
cg00000714 -1.802832421
cg00000721 3.066030471
cg00000734 -2.056260172
cg00000769 -3.132999649
cg00000807 1.136026482
cg00000884 2.44445689
cg00000905 -2.738818272
cg00000924 -0.140203825
cg00000948 3.198962652

Total number of rows: 485577

Table truncated, full table size 11063 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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