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Sample GSM927109 Query DataSets for GSM927109
Status Public on Nov 01, 2013
Title Tumor 68
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 55
tissue type: Tumor
estrogen receptor status: Negative
Stage: IIB
tumor grade: 3
node status: N0
survival (months): 13
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.138532426
cg00000108 3.048425772
cg00000109 2.035796621
cg00000165 0.863303601
cg00000236 2.072921952
cg00000289 0.751627451
cg00000292 -0.490746717
cg00000321 0.539680425
cg00000363 -1.02799033
cg00000622 -4.272606166
cg00000658 2.01310528
cg00000714 -1.943106823
cg00000721 3.08057045
cg00000734 -2.268663934
cg00000769 -3.364109423
cg00000807 1.135355572
cg00000884 2.171074217
cg00000905 -2.414285132
cg00000924 0.431464357
cg00000948 2.810749503

Total number of rows: 485577

Table truncated, full table size 11088 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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