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Sample GSM927108 Query DataSets for GSM927108
Status Public on Nov 01, 2013
Title Tumor 07
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 86
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIA
node status: N0
survival (months): 39
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.375802426
cg00000108 3.519963169
cg00000109 2.269086782
cg00000165 -0.28701425
cg00000236 2.509159766
cg00000289 1.004892856
cg00000292 0.983768354
cg00000321 -0.291937071
cg00000363 -0.949607538
cg00000622 -4.675734298
cg00000658 2.123309179
cg00000714 -1.660223154
cg00000721 3.143258765
cg00000734 -2.645778395
cg00000769 -3.195930212
cg00000807 1.457907281
cg00000884 2.522311762
cg00000905 -2.536094337
cg00000924 0.54341624
cg00000948 3.204453292

Total number of rows: 485577

Table truncated, full table size 11065 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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