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Sample GSM927107 Query DataSets for GSM927107
Status Public on Nov 01, 2013
Title Tumor 39
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 34
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIA
tumor grade: 3
node status: N0
survival (months): 120
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.112059121
cg00000108 3.172611943
cg00000109 2.396924081
cg00000165 0.709258512
cg00000236 2.424022045
cg00000289 0.768834106
cg00000292 -0.362544873
cg00000321 -0.209101608
cg00000363 -1.308678366
cg00000622 -4.829410642
cg00000658 2.361457964
cg00000714 -2.347714875
cg00000721 2.958672206
cg00000734 -2.919833862
cg00000769 -3.619701565
cg00000807 1.890308392
cg00000884 2.468460041
cg00000905 -2.547640141
cg00000924 0.122402179
cg00000948 3.189560313

Total number of rows: 485577

Table truncated, full table size 11085 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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