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Sample GSM927106 Query DataSets for GSM927106
Status Public on Nov 01, 2013
Title Tumor 41
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 59
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIB
tumor grade: 1
node status: N1
survival (months): 29
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.704571241
cg00000108 3.205220196
cg00000109 2.443595857
cg00000165 -1.313859945
cg00000236 2.795527193
cg00000289 0.914492212
cg00000292 1.180802934
cg00000321 0.554887982
cg00000363 -1.823761867
cg00000622 -4.633511138
cg00000658 2.048448496
cg00000714 -2.397375707
cg00000721 3.186657052
cg00000734 -2.638260983
cg00000769 -3.118617681
cg00000807 2.794219061
cg00000884 2.608177157
cg00000905 -2.740787527
cg00000924 0.529872272
cg00000948 0.694170315

Total number of rows: 485577

Table truncated, full table size 11084 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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