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Sample GSM927105 Query DataSets for GSM927105
Status Public on Nov 01, 2013
Title Tumor 38
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 34
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIB
node status: N1
survival (months): 121
survival event: Alive
death due to cancer: No
neoadjuvant therapy: Yes
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.620989367
cg00000108 3.272317844
cg00000109 1.645856007
cg00000165 -0.968659238
cg00000236 2.637578442
cg00000289 1.306728635
cg00000292 1.090867392
cg00000321 -1.116203385
cg00000363 -1.199679517
cg00000622 -4.488634493
cg00000658 2.119924403
cg00000714 -1.878611965
cg00000721 3.153754983
cg00000734 -1.992045992
cg00000769 -3.398917942
cg00000807 1.526294938
cg00000884 2.549914107
cg00000905 -2.581160961
cg00000924 0.341491332
cg00000948 3.089212001

Total number of rows: 485577

Table truncated, full table size 11073 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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