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Sample GSM927104 Query DataSets for GSM927104
Status Public on Nov 01, 2013
Title Tumor 06
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 65
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIB
tumor grade: 3
node status: N1
survival (months): 13
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.275981428
cg00000108 3.501226996
cg00000109 2.103035389
cg00000165 0.179346424
cg00000236 2.097654028
cg00000289 0.548705577
cg00000292 1.44499128
cg00000321 -0.102215711
cg00000363 0.311483027
cg00000622 -4.765433108
cg00000658 2.32622238
cg00000714 -2.497072677
cg00000721 2.211492287
cg00000734 -2.531972325
cg00000769 -3.002119647
cg00000807 1.695181848
cg00000884 2.010942574
cg00000905 -2.499552221
cg00000924 0.400711311
cg00000948 1.659252756

Total number of rows: 485577

Table truncated, full table size 11097 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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