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Sample GSM927103 Query DataSets for GSM927103
Status Public on Nov 01, 2013
Title Tumor 05
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 30
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIB
tumor grade: 3
node status: N0
survival (months): 23
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.627198226
cg00000108 3.458688026
cg00000109 2.425224141
cg00000165 -0.079828573
cg00000236 2.515134718
cg00000289 1.013749001
cg00000292 0.460322114
cg00000321 -0.452221224
cg00000363 -0.951169748
cg00000622 -4.465663478
cg00000658 2.036940695
cg00000714 -2.060517512
cg00000721 3.467486209
cg00000734 -1.811005363
cg00000769 -2.696083715
cg00000807 2.086587525
cg00000884 2.336997872
cg00000905 -2.805568326
cg00000924 0.400335311
cg00000948 3.329355041

Total number of rows: 485577

Table truncated, full table size 11069 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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