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Sample GSM927102 Query DataSets for GSM927102
Status Public on Nov 01, 2013
Title Normal 05
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 30
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.343590606
cg00000108 3.409856976
cg00000109 1.598041596
cg00000165 -1.242407491
cg00000236 2.400124803
cg00000289 1.043072527
cg00000292 1.09541169
cg00000321 -0.968494756
cg00000363 -1.440583512
cg00000622 -4.60073666
cg00000658 2.23964782
cg00000714 -2.193386863
cg00000721 3.32798182
cg00000734 -2.881034206
cg00000769 -3.036787906
cg00000807 1.394707164
cg00000884 2.356755264
cg00000905 -2.753688073
cg00000924 0.345875354
cg00000948 2.945860478

Total number of rows: 485577

Table truncated, full table size 11082 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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