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Sample GSM927101 Query DataSets for GSM927101
Status Public on Nov 01, 2013
Title Tumor 36
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 65
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: II
tumor grade: 1
node status: N1
survival (months): 132
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: Yes
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.684255952
cg00000108 3.174757397
cg00000109 2.26231789
cg00000165 -1.438119717
cg00000236 2.301171049
cg00000289 1.146313609
cg00000292 1.085052302
cg00000321 -1.563280068
cg00000363 -1.504734145
cg00000622 -4.518768382
cg00000658 2.14381456
cg00000714 -2.331149494
cg00000721 3.316634643
cg00000734 -2.466364273
cg00000769 -3.386548516
cg00000807 2.690735452
cg00000884 2.48876406
cg00000905 -2.631780607
cg00000924 0.596063228
cg00000948 2.796224292

Total number of rows: 485577

Table truncated, full table size 11078 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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