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Sample GSM927099 Query DataSets for GSM927099
Status Public on Nov 01, 2013
Title Tumor 03
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 39
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIB
tumor grade: 3
node status: N0
survival (months): 10
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.659755204
cg00000108 3.83743447
cg00000109 2.68088532
cg00000165 1.486767491
cg00000236 2.49618821
cg00000289 1.164483873
cg00000292 0.719230575
cg00000321 -0.842631153
cg00000363 0.620764707
cg00000622 -4.304815261
cg00000658 2.161957642
cg00000714 -2.543489369
cg00000721 3.237778089
cg00000734 -2.491970702
cg00000769 -3.519061988
cg00000807 2.629124871
cg00000884 2.509895386
cg00000905 -2.898365147
cg00000924 0.087554126
cg00000948 3.155794964

Total number of rows: 485577

Table truncated, full table size 11067 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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