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Sample GSM927098 Query DataSets for GSM927098
Status Public on Nov 01, 2013
Title Tumor 02
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 91
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: IIIB
tumor grade: 2
node status: N0
survival (months): 1
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.7311312
cg00000108 3.729868496
cg00000109 2.755208581
cg00000165 0.761352753
cg00000236 3.015073426
cg00000289 1.2340648
cg00000292 1.135052845
cg00000321 1.055040742
cg00000363 0.449801768
cg00000622 -4.642210123
cg00000658 2.450949086
cg00000714 -2.445169859
cg00000721 3.355612378
cg00000734 -2.894459298
cg00000769 -3.764829539
cg00000807 2.49997872
cg00000884 2.626523818
cg00000905 -2.87289114
cg00000924 0.337261286
cg00000948 2.873646068

Total number of rows: 485577

Table truncated, full table size 11084 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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