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Sample GSM927097 Query DataSets for GSM927097
Status Public on Nov 01, 2013
Title Tumor 35
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 42
tissue type: Tumor
estrogen receptor status: Positive
triple negative or basal-like subtype: No
Stage: I
tumor grade: 1
node status: N0
survival (months): 135
survival event: Alive
death due to cancer: No
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: No
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.825031159
cg00000108 3.418618086
cg00000109 1.770845798
cg00000165 -0.989341258
cg00000236 2.624035146
cg00000289 0.764230519
cg00000292 1.275595752
cg00000321 -1.522794386
cg00000363 -2.1127899
cg00000622 -4.774692368
cg00000658 2.299827154
cg00000714 -2.219278882
cg00000721 3.124319686
cg00000734 -3.000288292
cg00000769 -3.336462013
cg00000807 2.062744899
cg00000884 2.567885982
cg00000905 -2.525599223
cg00000924 0.641732682
cg00000948 3.240571655

Total number of rows: 485577

Table truncated, full table size 11081 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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