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Sample GSM927096 Query DataSets for GSM927096
Status Public on Nov 01, 2013
Title Tumor 34
Sample type genomic
 
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 42
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIB
tumor grade: 2
node status: N1
survival (months): 10
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: Yes
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
 
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
ID_REF
VALUE M Values

Data table
ID_REF VALUE
cg00000029 -1.073913932
cg00000108 3.440684067
cg00000109 1.737503711
cg00000165 -1.007997322
cg00000236 2.348119791
cg00000289 1.282872198
cg00000292 1.153021447
cg00000321 -1.382687812
cg00000363 -1.48185033
cg00000622 -4.427428486
cg00000658 2.387756625
cg00000714 -2.264812243
cg00000721 3.390868158
cg00000734 -2.822172528
cg00000769 -3.13157583
cg00000807 2.083013878
cg00000884 2.455858549
cg00000905 -2.706925944
cg00000924 0.809795755
cg00000948 3.359767218

Total number of rows: 485577

Table truncated, full table size 11075 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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