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Sample GSM927094 Query DataSets for GSM927094
Status Public on Nov 01, 2013
Title Normal 01
Sample type genomic
Source name Human Breast
Organism Homo sapiens
Characteristics race: African-American
age: 39
tissue type: Non-tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -0.926379341
cg00000108 3.496218479
cg00000109 1.880518703
cg00000165 -0.935239423
cg00000236 2.424437042
cg00000289 1.033774887
cg00000292 0.888269607
cg00000321 -1.155654731
cg00000363 -0.995853025
cg00000622 -5.049835683
cg00000658 2.099559676
cg00000714 -1.874219457
cg00000721 3.521018384
cg00000734 -2.527125476
cg00000769 -3.18880311
cg00000807 1.894249752
cg00000884 2.217365064
cg00000905 -2.67156835
cg00000924 0.677649391
cg00000948 3.395313238

Total number of rows: 485577

Table truncated, full table size 11073 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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