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Sample GSM927093 Query DataSets for GSM927093
Status Public on Nov 01, 2013
Title Tumor 33
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: European-American
age: 51
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: No
Stage: IIA
node status: N0
survival (months): 97
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.348510376
cg00000108 3.509526658
cg00000109 1.947929252
cg00000165 -0.945432032
cg00000236 2.605533955
cg00000289 0.843482965
cg00000292 1.318357726
cg00000321 -1.231215852
cg00000363 -1.557956102
cg00000622 -4.689002712
cg00000658 2.08313881
cg00000714 -2.314653445
cg00000721 3.365341982
cg00000734 -2.535856198
cg00000769 -3.16643748
cg00000807 2.588957145
cg00000884 2.632326277
cg00000905 -2.623277336
cg00000924 0.587305082
cg00000948 3.514379999

Total number of rows: 485577

Table truncated, full table size 11074 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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