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Sample GSM925249 Query DataSets for GSM925249
Status Public on May 02, 2012
Title Sleep recovery_volunteer9
Sample type RNA
 
Source name Sleep recovery_volunteer9
Organism Homo sapiens
Characteristics tissue: blood
Treatment protocol globin and DNAse treatment
Growth protocol RNA total from blood
Extracted molecule total RNA
Extraction protocol PAXgene kit
Label biotin
Label protocol IVT labeling kit
 
Hybridization protocol IVT kit (affymetrix)
Scan protocol GCOS
Description Human Genome Plus
Data processing Gene expression values were obtained using the three-step Robust Multi-array Average (RMA) pre-processing method (Irizarry et al., 2003), implemented in the Affymetrix Inc. package from R/Bioconductor. We applied the ComBat method prior to analysis for adjusting data for undesirable experimental variation (or batch effect) caused by different days in which the microarrays were processed. ComBat implements an empirical Bayes approach, that is commonly used in microarray analyses due to its ability to robustly handle high-dimensional data when sample sizes are small (Johnson et al, 2007).
 
Submission date Apr 30, 2012
Last update date May 02, 2012
Contact name Renata Pellegrino
E-mail(s) renata.pellegrino@gmail.com
Phone 2154327670
Organization name UNIFESP
Street address Rua NApoleao de Barros 925
City Sao Paulo
ZIP/Postal code 04024-002
Country Brazil
 
Platform ID GPL570
Series (1)
GSE37667 The peripheral genome-wide gene expression profiles in humans after prolonged wakefulness and sleep recovery

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 6.583216473
1053_at 6.75748892
117_at 9.207079189
121_at 6.944986047
1255_g_at 2.369011543
1294_at 8.51266069
1316_at 5.076363414
1320_at 2.851318833
1405_i_at 11.84804215
1431_at 3.07127505
1438_at 4.287208112
1487_at 7.636387146
1494_f_at 4.873183097
1552256_a_at 6.081463333
1552257_a_at 7.315799089
1552258_at 4.391858284
1552261_at 2.918167455
1552263_at 8.638713588
1552264_a_at 8.708343714
1552266_at 2.573539111

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM925249_RIC_rebote.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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