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Sample GSM925242 Query DataSets for GSM925242
Status Public on May 02, 2012
Title Sleep recovery_volunteer2
Sample type RNA
 
Source name Sleep recovery_volunteer2
Organism Homo sapiens
Characteristics tissue: blood
Treatment protocol globin and DNAse treatment
Growth protocol RNA total from blood
Extracted molecule total RNA
Extraction protocol PAXgene kit
Label biotin
Label protocol IVT labeling kit
 
Hybridization protocol IVT kit (affymetrix)
Scan protocol GCOS
Description Human Genome Plus
Data processing Gene expression values were obtained using the three-step Robust Multi-array Average (RMA) pre-processing method (Irizarry et al., 2003), implemented in the Affymetrix Inc. package from R/Bioconductor. We applied the ComBat method prior to analysis for adjusting data for undesirable experimental variation (or batch effect) caused by different days in which the microarrays were processed. ComBat implements an empirical Bayes approach, that is commonly used in microarray analyses due to its ability to robustly handle high-dimensional data when sample sizes are small (Johnson et al, 2007).
 
Submission date Apr 30, 2012
Last update date May 02, 2012
Contact name Renata Pellegrino
E-mail(s) renata.pellegrino@gmail.com
Phone 2154327670
Organization name UNIFESP
Street address Rua NApoleao de Barros 925
City Sao Paulo
ZIP/Postal code 04024-002
Country Brazil
 
Platform ID GPL570
Series (1)
GSE37667 The peripheral genome-wide gene expression profiles in humans after prolonged wakefulness and sleep recovery

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 6.448065112
1053_at 6.468521897
117_at 8.769627105
121_at 6.867371794
1255_g_at 2.343134363
1294_at 8.103881657
1316_at 5.53092944
1320_at 2.794705425
1405_i_at 12.09306758
1431_at 2.823751649
1438_at 4.194704853
1487_at 7.693031786
1494_f_at 4.582794842
1552256_a_at 6.142474266
1552257_a_at 7.119127305
1552258_at 4.593598417
1552261_at 2.804842553
1552263_at 8.260931312
1552264_a_at 8.620554316
1552266_at 2.414455982

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM925242_MAR_privado.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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